AT5G45570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.727 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ulp1 protease family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ulp1 protease family protein; FUNCTIONS IN: peptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410), Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT4G08430.1); Has 700 Blast hits to 621 proteins in 109 species: Archae - 2; Bacteria - 56; Metazoa - 133; Fungi - 34; Plants - 331; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18472301..18475574 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105811.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.56 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
| Length | 921 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSSHTRSY PLRLYEEGKS PLQKRSMAHS CYVSQIGKIK DGLGADVWDE LKKTTLGLFI KFTESGFIWA AQTVHFFLTN QLRVDNIHEM WCLIDRRPIR 101: FSLYEFENIT GLNCDMFDES DTGETDYKDF WNEMGVSMSV GPLFTELERV FEISKTWSLE KRMMVGRLCL LSVGVHGIHH GSRVPLSSAK RVLDPVAFEK 201: YPWGRVAFDS LSRSVKIVKY DGDSYVIHGC VQTLLVWIYE SVPGIGEACG FRKTNLTGVP LLDWRSSRKR FNFTAFIEKE KAAHGQVRVR HMIPVSEENM 301: YPQWSDSAEN HDTALDNLLK DIIHNRLKSH AWTHVAARRK RKQNQESSNE DGESKVIEST PADDVSHKKQ RTGKAHIKVD EEEKTSLLDI WNMLEKMNVT 401: ISDMDKNASS RLVGLEKKVA CLEASVKTRF EAVETDMRVL KESQPPVVSN EAATSNNNDE YEANSNQCSW IVEEKPGSVD GLPIQRVVKK TVNLVKNKEA 501: ATKVLTKKKV AKYDKKKTIV NVEKVEKPKP EMKKTVVKVE KVDSPKPLQK KSVAAPTTKT FDDDVVDVTD KMANKATADA LRALQEGLDN LDGITSKRRR 601: VPQLAGSQKY PYVGNSTVKR IITDVPSSSS VPEHLQPVSD DQFDRLKDWL EPDFEKEGLN TNNFNARFYW QIMTPRNDWP TERYGWLKDY HMGAAMSLFR 701: RRFNRDPSKY PNQRIAFLDQ DLISTMLKDY KQFQPDYRCF KFREYYEDQV NGTAHCEAAT NKKWFVDVDH LYAYLFVNGN HWVALDIDLT NKRVNVYDSI 801: PSLTTDTEMA IQCMFVMTMI PAMLSSFIPS KQRRRSYSKL EWKRITKIPE NLDPGDCAIY SIKYIECLAL GKSFDGLCDE NMQSLRTKLA VEMFEEIGEN 901: ARTLHSKVRR KAFKFPSLMD E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)