AT5G45540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.863 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF594) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF594); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45480.1); Has 1285 Blast hits to 857 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18458294..18460705 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93237.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.44 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||
| Length | 803 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTDMIPPHLR KLWDKWNIRG VIILSLFLQT ILIFFAPSRR RTAKKLFLVL IWSAYLLADW AADYAVGQIS DSQEEEAESN KPSKNRELLA FWSPFLLLHL 101: GGPDTITALA LEDNELWDRH LFSLVCQAVA TVYVILLSIP NRLLTPTLIM FVGGVIKYVE RTAALFSASL DKFKDSMLDD PDPGANYAKL MEEYEARKKM 201: NMPTDVIVVK DPEKGREGNT PVRPDNELTA LQVIQYAYKY FNIFKGLIVD LIFTNQERDE SRKFFDKLTA EEALRIIEVE LGLIYDCLFT KAEILHNWTG 301: AVFRFIALGC LVASLCLFKM NKKDQYDGFD VVLTYALLIC GIALDSIALL MFCVSDWTIA RLRKLKEDLE EKDTLTDRVL NWILDFKTLR WKRSKCSQDG 401: HQVLNRNFMF RRWSEYVHAY NLIGFCLGIR PKRIHYTKGK IHSFFHQTVH ILSIDTAIEN ATRGTRQFHN WIGRFLSNLS KRDNSVIRTG LRWFLFFPQL 501: LGLLIYNFLD FFGIKDLVEE IRFTVSDRLT RELWEFIFTE VQQKHRFAED QESAKGISSA RGNWTLLETS SKKKEDGTDH TKLLQYVTEK DYDQSILLWH 601: IATELLYQKP IDKKVTEKEE HSTNREKEEH SNREFSKILS DYMMYLLIVQ PTLMSAVSGI AKIRFRDTCE EAKDFFQRRH VDKSRYVKKN LMKEACRAIL 701: SVNTEIDPMA VKGDRSKSVL FDASVLAKEL MNEGENMWEV VSKVWVELLC YASLHCDSQE HASQLSKGGE LINFVWLLMA HFGLGDQFQI NRDDARAKLI 801: VAN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)