AT5G45530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.636 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF594) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF594) (TAIR:AT5G45470.1); Has 1338 Blast hits to 867 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1338; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18454316..18457222 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 92276.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||
| Length | 798 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVIPPAIKK ILDKWNIRGL VIMSLLFQTS LIFLAPMRKR TSKKLLAAVL WTAYLLADWT ANYAVSQITK NQGKETEPGD PPKNKKLLAL WAPFLLLHLG 101: GPDTITALAL EDNALWQRHL FGLVSQALAG VYAVVQSLEN VLWPPITLLF ITGTIKYVER TRALYSASLD KFKDRMLQRA DAGSNYAKLM EEFASRKMSN 201: LPTEIFLTDE PDKHERPPTL VKPDRDLTDL EIVQYGFKFF NTFKGLVVDL IFSFRERDES RDFFKELKPG EALRIIETEL GFLYESMYTK TAILHTGIGT 301: LFRLISFGSL LSSFFVFHRR PLKSEDFHGA DVVITYVLFI VGIALDLASM VIFLLSDWTF AVLRNLKDDP EEKSTSIDSL FNWFLEFRKP RWKKHTCNGN 401: QTHEVLSTGF FTRRWSGTIY GFNFIGFCLK AKVSRIHQKR NCNLLVWDYV VSLFDLVIRR IQMMIGWIKN VNRSIRSVLR QWSKKNPMIR CTVYPLYLVF 501: FAGIPEVFRV LWKYIDRIFS VTSYLDGIRF ISREPLTKNQ WEFIFNEVKD KSGFAETPEV AKKVSWARGE WALRDSKLME VDTLMRYIEK VDYDQSLLLW 601: HIATELCFQK EEGGKMEKLS REGYDDREFS KIISDYMMYL LIMRPKLMSE VAGIGTIRFR DTKAEAERFF KGRQIKDLRD MKRASETVLL VSNDIEPILV 701: KGDRSKSVLF DASMLAKELQ NLKESSNEDG KWRVLSKVWV ELLCYAASHC KATEHVAQLS RGGELLNFVW LLMAHFGLGD QFQINKGDAR AKLVVGEG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)