AT5G45510.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.665 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; INVOLVED IN: defense response; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G19050.1); Has 21605 Blast hits to 14378 proteins in 991 species: Archae - 45; Bacteria - 2120; Metazoa - 5951; Fungi - 1098; Plants - 7277; Viruses - 59; Other Eukaryotes - 5055 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18444798..18448952 | ||||||||||||||||||||
| Molecular Weight (calculated) | 136484.00 Da | ||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||
| Length | 1210 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSDPLKMAAE TEEIKPVPAA MGEKKDVVLC KKIVETLGGG GDQRVLLVGE AGIGKTRMAQ MVDKEASKDV LCYQTLWLHL NRKFKVNDNY IKEKKFEDEW 0101: SLYENIASQL SLYSDFEETE VGERDEDEEE EKKVEDLLKD LKPKIEKYLL EKKEAVVKKL EDDKKKKEKE AAEKLEAEKK LVDPAAKKAK DHGNKNPTDA 0201: AKEKTTQVVA GGEDKAQTSS ERKPYLLLIL DDEGMTSEYE VMVHLGLEDF LKDHTPRKIL ITRRQETEEA TKSGEHAEGE ANDSQSGEKK EDTDGEDEIR 0301: SADKEEPESQ ARVKTEEKHE KVVPPTIDDL WGSTNTYGEI TFQTTNESQD LLESFNLKEA EALFTSSMFF KDMPNFFFDP VPGTDEKLLN HMLKKSKSLP 0401: AAINVLAKSL EYTVKSKSYK LNKDEEERLL KEKIEMVLSA ERGNPSDQES SSESPKKASG ENPILLLAYK LFKTDGPLKD TILDCFWHSL DFFEHCGCVY 0501: YRDLITQWIL EGYFDPVRSV EKAYQDGHSI FMELIDRGML KIQENNVVVP EMAMRNVIDP RRGGHLGKSR LGFSRVYGGN KRKGIGKITQ LDDMIKTVQA 0601: KKGDKITTIL VSGDRLRRVT PKKFFKNLKE LEVLGLFEPT VKPFVPSFSD QLKLLRVLII RDCDLLKSIE ELKALTKLNT LEVSGASSLS KISEKFFESF 0701: PELRSLHLSG LKIESSPPSI SGLKELHCLI IKDCPLLQDL PNIQELVNLE VVDVSGASGL RTCFDNADGA KKNKSKNKNF YLLTKLQHLD FSGSQIERLP 0801: IFQDSAVAAK LHSLTRLLLR NCSKLRRLPS LKPLSGLQIL DLSGTTSLVE MLEVCFEDKL ELKTLNLSGT NLSELATTIE DLSSLNELLL RDCINLDAIP 0901: NIEKLENLEV IDVSGSAKLA KIEGSFEKMF YLRVVDLSGT QVETPELPAD TKIHCLKRFT RADGKCFERD TWREIKEDIE RDRSENASSS DAVVISQEIT 1001: EKKPVEIREV ESNAPRASDC TEKVDVNKER LLKVPIDRAL YQKALTSLVD SKIPQEEVLE INETNKLDEE ALASAEFVSF VDCTPERVKS IFEKAKLVKG 1101: CWLRMCFDIK DPFDGVDEEN LKSLETLSIT NLLSLETISF IAKLENLKNL SLDCCPKIKT IFPEMPASLP VLNLKHCENL EKVVVGVEVS THTNLDLKVE 1201: NCPKFGVVCA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)