AT5G45470.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein of unknown function (DUF594) | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 1360 Blast hits to 854 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:18422164..18424764 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 100193.00 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||
Length | 866 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MVEVIPKHIK DVWDRWNIRG AVILSLTLQA ILICFSPLRK RTPRRLLIVL VWSSYLLADW SANFAVGLIS KNQGKDLKPD DPPQDKKVMA LWAPFLLLHL 101: GGPDTITAFA LEDNALWLRH VFGLVFQAIA GVYVVVMSLP NSLWVVIVLV FVSGTIKYLE RTTALYSASL DKFRDSMIQA PDPGPNYAKL MEEYKAKKEA 201: RLPTKIVLID EPDKENRPKK LEHPALASKK RKKDLTDLEI VQYAYKFFNT FKGLVVNLIF SFRERDESLE IFENLNDPEE ALRIIEIELG FLYDALFTKI 301: AILHTGIGTV SRVFASGTLV AAFIIFHKKP NKGTDFHGAD VVVTYTLFAV GLVLDFISIL LFLFSDWTCA AYSSLKDDPD ELQSWQERCF NWLLKFRKLR 401: WTPQECHKTG MHKCTKEGLK PCIMKGADKK EGGNKNEGGN KKEGDDKKEA ADKCSLVDKH DVLTTRFFLR RWSGSINVFN FIAYATKADV ERIHDARGSF 501: RRYSWKIITF PFKKLNFVIK KIFGSIVKLI NEVHRRISHE VNALSRKHLW ARRFLYPIYF EFISRIPHFI KSVWDILSEF FDISDTLDMV HKTLFVHGEP 601: MTRELWKFIF EELKNKSKYG DSPENAKRIS LARGEWTLRE NLPVDAEREK LVRYVTKVDY DQSLLMWHIA TELCYQQHEK ETIPEGYDEQ RKHYSNREFS 701: KIISDYMMYL LILQPGLMSE VAGIGKIRFR DTLAETHKFF QRRHIENDRS VETATLNILD VESEIEPMGV KGDRSKSVLF DASRLAKDLA EMEKTHNKDK 801: WEILSKVWVE LLCYAACHCD STAHVEQLSR GGELINFVWL LMAHFGLTDQ FQINKGDARA KLIIGK |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)