AT5G45275.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.991 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G19450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18334476..18337240 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62541.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.28 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.64 | ||||||||||||||||||||||||||||
| Length | 570 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGQSRKWMI LVATIWIQAF TGTNFDFSTY SSNLKSVLGI SQVQLNYLAV ASDLGKVFGW SSGLALLYFP LWTVLFAAAI MGFVGYGVQW LVITNVISLP 101: YILVFLCCLL AGLSICWFNT VCFVLCIRNF PANRSLALSL TVSFNGVSAA LYTLAYNAIN PVSTELYLLL NALVPLFVSF AALIPILRQP PLEPLPPDGV 201: RRDSLMFLLL NILAVLNGVY LLLFRSKTSD VTSARLLFGG SILLLILPLC LPGLVYARNW YLHNIHSSFR LEGSGFILVD VDELEMHKGM VTREASLEGY 301: QLLNDDVVRA VNTPDQKSFI EDDDGCCCTK VITRNQLGML GEEHPLSFLL CRSDFWLYYI AYFCGGTIGL VYSNNLGQIA QSLGQSSETT TLVTLYSSFS 401: FFGRLLSATP DYIRAKVYFA RTGWLAVALL PTTIALFLLA SSGSLAALQA GTALIGLSSG FIFAAAVSIT SELFGPNSVG VNHNILITNI PIGSLVYGFL 501: AALVYESHSV AGSKTESVIC MGRDCYLQTF MWWGCLSVIG LASSVVLFLR TRRAYQRFEQ DRITSSMLYS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)