AT5G45240.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.971 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G51560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:18313706..18319089 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 93056.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.10 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||
| Length | 812 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDKKEETKQP DNIIYDKNDS SVASFISYLM AGFGCRGIKQ FLGIYLVILS RDYASSVLCL ENLELCCDDK KSYEVVPVFY GVSRSDVRQQ SGPFSDAFTK 101: LERSNPADHV TKWRRMFAKI AELKGHEYDE ELSEESEFVE EIVEDVYELL NPTEEIRIHS RQLDIQNLLC KQQWGLRTLG ILGKPGIGKT TLARAVFRRM 201: VGGYDASHFV KDFHTRYSEM TLEPLPAHFL CMTQVEEFDL NNSGSEQCHR QKRVLIVLDD VRNEQDAMSF LGEIDQFGPG SLIIITSRDR QVLEKCHLNE 301: IYELNGLNGE DARKLFTRCA FGKDVIVKNL PMIVIKGFEG NPSALRSYAN KFKGKTTEDS MRILFKDAVF NTKKNTSMCI YSNIAIHEHK SIFLNKTVLH 401: AIQNIIFDLE EHPDLDLPNH VAESISDLRS PCVHHPSVQV QSLPKHFHRR QLVLLHGLAC QFYKLWEGYK RFSRLRKINL GHCEKLVQVV ELSNACYLEE 501: INLQDCKNLD TFPDTDQLEN LQFLDLSNCS GIKYFQENAS KLEKLWDGAQ STGFLIPERN PRSTNLERLD LSVCSSLMLL PPSIGHLQQL KDLNMEEISR 601: NISYLYLDKT AIEEVPQWIE DISGLSDLSM SDSWQNHPEE ISTSLMRVDM SGNSFERLPD TWTSIQPKDL ILGNCKNLVS LPELPATLSL LTANNCVSLE 701: SLYVHGNVLT VSLPRISLSK QILRYKACIV VESRPGPVND PPAELSYGDV QFEFLCLDHR KEIIKIKECG IQLMEVYSRK RSGTEDGNKP AENDEELRRI 801: RKQMRVRMTK HW |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)