AT5G45230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.968 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: carpel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G36150.1); Has 29193 Blast hits to 19389 proteins in 730 species: Archae - 16; Bacteria - 1546; Metazoa - 3956; Fungi - 333; Plants - 22276; Viruses - 6; Other Eukaryotes - 1060 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18302147..18308303 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 139738.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.06 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1231 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVTSSDVKVE PQVFINFRGD ELRKTFISHL HKRLQRDGIN AFIDSDEAVG EELKNLFKRI ENSEIALAVL SSRYTESHWC LQELVKMMEC SMKGEGCNKK 0101: LLVIPIFYKL KIDTVKELDG DFGRNLWDLW RKPGCGRDRD SRIVKWNEAL KYFLSRNALV FSETGKEEEF VSTIATHVKN ALSKITPQRG ENPKPQKGAG 0201: NPKPQKILSR AANITEPEDQ RLKQLAVKLN VECNDNETRI VEVVGMPGIG KTYLAKKLFA KLKKKINHCV FIEFKREMSA EQGSEWLQKR LVEGLLDIQD 0301: CTDTNALEVW KDSLIDKKVV IVFDDVSDKK QISEPLKGIC DWIKKGSMIV ITTRDKSLTE GLVTDLYEVP GLNERDGLEL FRAQVCCNIE GNFMELSRKF 0401: VDFARGNPLA LEEFGKELRG KDEAHWETRL GTLAQHSNPT IREKLRSSYD ELNEQQKDAF LDIAYFFRSQ DESYVRSLLD SYDPESAESG QEFRDLADKF 0501: LIGVCDGRVE MHDLLFTMAK EIVEATAEKS RLLLSSCAEL KNKELSLDQQ GRDKVRGIVL DMSEMEEKPL KRAVFVGMSS LRYLKVYSSL CPTHSKTECK 0601: LHLPDGLEFP KDNIVRCLHW VKFPGTELPP DFYPNNLIDL RLPYSNITTL WSCTKVAPNL KWVDLSHSSN LNSLMGLSEA PNLLRLNLEG CTSLKELPDE 0701: MKDMTNLVFL NLRGCTSLLS LPKITTNSLK TLILSGCSSF QTFEVISEHL ESLYLNGTEI NGLPPAIGNL HRLIFLNLKD CKNLATLPDC LGELKSLQEL 0801: KLSRCSKLKI FPDVTAKMES LLVLLLDGTS IAELPCSIFH LSSLRRLCLS RNDNIRTLRF DMGHMFHLKW LELKYCKNLT SLPILPPNLQ CLNAHGCTSL 0901: RTVASPQTLP TPTEQIHSTF IFTNCHELEQ VSKNAIISYV QKKSKLMSAD RYSPDFVYKS LIGTCFPGCE IPAWFNHQAL GSVLILELPQ AWNSSRIIGI 1001: ALCVVVSFKE YRDQNSSLQV QCTCEFTNVS LSQESFMVGG WSEQGDETHT VESDHIFIGY TTLLNIKNRQ QFPLATEISL RFQVTNGTSE VEKCKVIKCG 1101: FSLVYEPNEA DSTSWKETPR MEDNRQDRRI SFKTGEGDDC PIATPTTADS KKGNSLFSYF LGRDTSITKK GFKIPKQIDV GMRKYSQMKF QNEQVEVEHF 1201: PGNEQKANIL KNALGRIKFK ETRDVVGVQD V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)