AT5G45200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.831 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G36150.1); Has 28903 Blast hits to 18982 proteins in 765 species: Archae - 18; Bacteria - 1854; Metazoa - 4567; Fungi - 301; Plants - 21032; Viruses - 0; Other Eukaryotes - 1131 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18283967..18290332 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 142580.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1261 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MATSSSNVVV HQQQPPPQHK VFINFRGAEL RHKFISHLLK ALERERINVF IDTRETMGTG LENLFQRIQE SKIAIVVISS RYTESQWCLN ELVKIKECVE 0101: AGTLVVFPVF YKVDVKIVRF LTGSFGEKLE TLVLRHSERY EPWKQALEFV TSKTGKRVEE NSDEGAEVEQ IVEHVKEILR TISGEIPRGR ESESPRGEGE 0201: GEAEPKTTPS DDSLLHGIET RVEQLKEKLE LKSENVTRFI GVVGMPGIGK TTLAKRLFSE CGKHFLHKMF LDDVSQKPEP FLDETLHTDL LLGLWKSKNN 0301: GRDGNRAKLS IDYIKTQLQG KKVFVVLDNV GDKSQIDKIL GGCDWIKAGS RIVITTSSKS VIQGLNSTYL VPGLSSCDAL NHFNYHAFSA SDGFYQPSFT 0401: DLAKQFVDYS MGHPSVLKLL ARELRSKDES YWKEKLSALA NSPSNTIQDV LRIPYDELKE QHKIVFLDIA YFFRFENESY VRRLLGSSAH ADASEITDLA 0501: DKFLIDISGD RVEMNDLLYT FAIGLNSQAS SENTTSERRL SKHSEIVDVL MNKAEATKVR GVYLDMFEVK EMGLDSDTFN KMDDLRYLKF YNSHCHRECE 0601: AEDSKLNFPE GLEFLPQELR YLNWLKYPEK NLPINFDPKN LIDLKLPYSQ IEQIWEEEKD TSNLQWLDLN HSSKLHSLSG LSRAQKLQSI NLEGCTGLKT 0701: LPQVLQNMES LMFLNLRGCT SLESLPDITL VGLRTLILSN CSRFKEFKLI AKNLEELYLD GTAIKELPST IGDLQKLISL KLKDCKNLLS LPDSIGNLKA 0801: IQEIILSGCS SLESFPEVNQ NLKHLKTLLL DGTAIKKIPD ILHHLSPDQG LTSSQSNCHL CEWPRGIYGL SSVRRLSLSS NEFRILPRSI GYLYHLNWLD 0901: LKHCKNLVSV PMLPPNLQWL DAHGCISLET ISILSDPLLA ETEHLHSTFI FTNCTKLYKV EENSIESYPR KKIQLMSNAL ARYEKGLALD VLIGICFPGW 1001: QVPGWFNHRT VGLELKQNLP RHWNAGGLAG IALCAVVSFK DYISKNNRLL VTCSGEFKKE DKTLFQFSCI LGGWTEHGSY EAREIKSDHV FIGYTSWLNF 1101: MKSDDSIGCV ATEASLRFQV TDGTREVTNC TVVKCGFSLI YSHTNVDHSL CTDNYSDVTT TTSGGTSSGS ITDVGESCYQ NGSEEIIEEA MLFAASREVE 1201: EEEDTESLVT LSSLMGESPK RSEKKVLMSV RNGSTREVAI ERDVNNAHCL SFLNVFRFWR D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)