AT5G44970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.880 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G44950.1); Has 667 Blast hits to 656 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 667; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18155837..18157340 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44476.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.11 | ||||||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNDIISELP DSLITQILLW LPTKDSVKTS VYRPDGEIFG LKFQEWIAAA VDRGIQHLDF ETKNPSLFLK DSMPMNIYKS KTLVSLKLVC VELENPKFVV 101: SLPCLKIMHL ENNWYGYDAP LVVEKLIAGC LVLEDLTVVR IHDMVIPDLP LLHVKSLTLK ILRLVFDLEM MTTIPISVEI DAPKLEYMSF INRHSDTIMV 201: KNLSSLFKLN LDTEFGYSSL EPRDIIRDVL TGISSVRQMI ISQRTLEVIC RYSKLGPIPK FHHLSHLKAA FSSTSLQLLP AFLESCPNLK KLILDLYVSA 301: EPEEIDLTNV PRCITSTLEC IEINKLIRKE ATGVKLVHYF LENSPILKKL KPSFTDSPMS TMTNLPLDHL YKMYLTARKR SRRCQVIIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)