AT5G44785.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : organellar single-stranded DNA binding protein 3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
organellar single-stranded DNA binding protein 3 (OSB3); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Primosome PriB/single-strand DNA-binding (InterPro:IPR000424); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 9 (TAIR:AT4G20010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18070877..18073010 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50130.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.46 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||||||||||||||
| Length | 442 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNLISRTLTR AVSSSLYHSK AAKLPTQKWI ISQQIRVFSA TVISGGGKKP LAKVSVKPPL NVATEKESTP PKKIEYKPEI SNWINLIGFV EQPVQFGPCS 101: DGKFWAGTVI SQRSGSKSSN FWIPIIFEGD LAKIAVQHVK KEDRIHVSGK LFIDSPPPNV TYSQSNVQVM VQNLNFVQAA TSTTKTISPP EKEVTSIKKK 201: PARSKKVKVI DEETSNSWKH LIENPKEWLD HRGNKANGLV KPGHPDFKMK VGGLSLWLST APDWALLKLE ELKFDVLVPK GNIKLNQLKD IGEESWKDLV 301: QNPDKWLDNR SDKTNVKYPD FKHKETGEAL WMTNSPIWVL SKLPPLKKNQ ERPFMSNKVS QLELDVEVPK GNLKQLKREE IWKNLVENPS KWWDNRLDKR 401: NPKGPDFKHK ETGEALWIGD SPTWALSKLP PLKKNQERPV MA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)