AT5G44640.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:vacuole 0.673 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : beta glucosidase 13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
beta glucosidase 13 (BGLU13); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 12 (TAIR:AT5G42260.1); Has 11271 Blast hits to 10941 proteins in 1459 species: Archae - 140; Bacteria - 7743; Metazoa - 717; Fungi - 200; Plants - 1456; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:18011146..18012669 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 56959.70 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 507 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MRTKYFSLLV FIIVLASNEV IAKKHSSTPK LRRSDFPKDF IFGAATSAYQ VEGAAHEDGR GPSIWDTFSE KYPEKIKDGT NGSIASDSYH LYKEDVGLLH 101: QIGFGAYRFS ISWSRILPRG NLKGGINQAG IDYYNNLINE LLSKGIKPFA TIFHWDTPQS LEDAYGGFFG AEIVNDFRDY ADICFKNFGD RVKHWMTLNE 201: PLTVVQQGYV AGVMAPGRCS KFTNPNCTAG NGATEPYIVG HNLILAHGEA VKVYREKYKA SQKGQVGIAL NAGWNLPYTE SAEDRLAAAR AMAFTFDYFM 301: EPLVTGKYPV DMVNNVKDGR LPTFTAKQSK MLKGSYDFIG INYYSSSYAK DVPCSSENVT LFSDPCASVT GEREGVPIGP KAASDWLLIY PKGIRDLLLY 401: AKYKFKDPVM YITENGRDEA STGKIDLKDS ERIDYYAQHL KMVQDAISIG ANVKGFFAWS LLDNFEWATG YSVRFGLVYV DFNDGRKRYP KKSAKWFRKL 501: LSEKKRN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)