AT5G44270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.953 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TPX2 (targeting protein for Xklp2) protein family | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: targeting protein for XKLP2 (TAIR:AT1G03780.2); Has 137 Blast hits to 127 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 130; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17833636..17835740 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 35891.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.00 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METKITFVWE VCQLGLGPIS LPGSQKCMRP DYSLALVGKH SKLGTDSVVV LRGEVHSKVL RDCKSRDCTI LLVLHNSKSR QVKPSKGKSL MMGANPDREH 101: KGALRLPMTL KRRKNSEFVT SQRVRPKQQS CTEMRKLKTK HALPLCFTKI LAAPAMPTPQ RSTPHPPEFQ VNHTDQTTRF KRSYPKYFLN QISVLDKLKA 201: SYRIFQEFNL HVDHRPIERA DFDHKIKEKE MMYKRHLEEA EAAKMVEEER ALKQLRRTIV PQTRPVSNLN NPFLPHKSNK ETTKPNSPKL RVIRRIDRRT 301: MMMVSPHMR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)