AT5G44230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.830 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; EXPRESSED IN: embryo, leaf; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 34838 Blast hits to 13612 proteins in 233 species: Archae - 0; Bacteria - 9; Metazoa - 42; Fungi - 69; Plants - 34172; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17814336..17816309 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 73674.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.78 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTVAHSHRFS TAVNPINISL LSKQLLQLGR TSNNSGTFSE ISNQKELLVS SLISKLDDCI NLNQIKQIHG HVLRKGLDQS CYILTKLIRT LTKLGVPMDP 101: YARRVIEPVQ FRNPFLWTAV IRGYAIEGKF DEAIAMYGCM RKEEITPVSF TFSALLKACG TMKDLNLGRQ FHAQTFRLRG FCFVYVGNTM IDMYVKCESI 201: DCARKVFDEM PERDVISWTE LIAAYARVGN MECAAELFES LPTKDMVAWT AMVTGFAQNA KPQEALEYFD RMEKSGIRAD EVTVAGYISA CAQLGASKYA 301: DRAVQIAQKS GYSPSDHVVI GSALIDMYSK CGNVEEAVNV FMSMNNKNVF TYSSMILGLA THGRAQEALH LFHYMVTQTE IKPNTVTFVG ALMACSHSGL 401: VDQGRQVFDS MYQTFGVQPT RDHYTCMVDL LGRTGRLQEA LELIKTMSVE PHGGVWGALL GACRIHNNPE IAEIAAEHLF ELEPDIIGNY ILLSNVYASA 501: GDWGGVLRVR KLIKEKGLKK TPAVSWVVDK NGQMHKFFPG NLNHPMSNKI QDKLEELVER LTVLGYQPDL SSVPYDVSDN AKRLILIQHT EKLALAFSLL 601: TTNRDSTITI MKNLRMCLDC HKFMRLASEV TGKVIIMRDN MRFHHFRSGD CSCGDFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)