AT5G44180.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Homeodomain-like transcriptional regulator | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT domain (InterPro:IPR004022), Homeodomain-like (InterPro:IPR009057), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-1 (TAIR:AT1G28420.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17783172..17789872 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 169593.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.98 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1507 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEGGSEKTTP EGCGGESKSK RKMKTAAQLE VLENTYSAEP YPSEAIRADL SVKLNLSDRQ LQMWFCHRRL KERKSTTPSK RQRKELVTPT AMESWEPPVN 0101: AGDLVAGNEL DSRRAARGSG GSGVTVVRRF NEPSSAEVRA IGYVEAQLGE RLRDNGPVLG MEFDPLPPGA FGMPIEMPSH RKATRQAFET NIYVRSDVKP 0201: IKDHVRPIRE YQFIPELPSS RTDHSERVSP SHHFGVPLDG SVMRVSAVSA GHRDDYKISP QIPNLNLATH QGKPGHVYSP NLVEYDSPYQ KSYMDTAAQV 0301: HDDPFVKSER EVGNEDEDDD ALQLERHRKN EEARIAREVE AHEKRIRREL EKQDMLRRKR EEQIRKEMER QDRERRKEEE RLLREKQREE ERYLKEQMRE 0401: LQRREKFLKK ETIRAEKMRQ KEEMRKEKEV ARLKAANERA IARKIAKESM ELIEDERLEL MEVAALTKGL PSMLALDFET LQNLDEYRDK QAIFPPTSVK 0501: LKKPFAVKPW NGSDENVANL LMVWRFLITF ADVLGLWPFT LDEFAQAFHD YDPRLMGEIH IVLLKTIIKD IEGVVRTLST GVGANQNVAA NPGGGHPHVV 0601: EGAYAWGFDI RSWRKNLNVF TWPEILRQLA LSAGLGPQLK KMNIRTVSVH DDNEANNSEN VIFNLRKGVA AENAFAKMQE RGLSNPRRSR HRLTPGTVKF 0701: AAFHVLSLEG EKGLNILEVA EKIQKSGLRD LTTSRTPEAS VAAALSRDTK LFERVAPSTY CVRASYRKDA GDAETIFAEA RERIRAFKSG ITDVEDVDDA 0801: ERDEDSESDV GEDPEVDVNL KKEDPNPLKV ENLIGVEPLL ENGKLDTVPM KTELGLPLTP SLPEEMKDEK RDDTLADQSL EDAVANGEDS ACFDESKLGE 0901: QWVQGLVEGD YSNLSSEERL NALVALIGIA TEGNTIRIAL EERLEVASAL KKQMWGEVQL DKRWKEESLI RANYLSYPTA KPGLNIATPA SGNQESSSAD 1001: VTPISSQDPV SLPQIDVNNV IAGPSLQLQE NVPGVENLQY QQQQGYTADR ERLRAQLKAY VGYKAEELYV YRSLPLGQDR RRNRYWRFSA SASRNDPGCG 1101: RIFVELQDGR WRLIDSEEAS LPPEGLEAFW TENLRKSWGM KLLSSSSHED LYQVLTTLEA ALKRDFLSSN FETTSELLGL QEGALASDLT CGVNVLPWIP 1201: KTAGGVALRL FDFDSSIVYT PDQNNDPLKD KESEDFVGLE TNILRNLHEK DVMETPVQVA AYKQEENWTD PGLGGVSSSG RGGRPPRGRG RPRARGNGKK 1301: PAVSVKPPRG AANSNGETML RPRAQPRGGR KNGRRSGTKG RKRPTQGTLG ICNEVGGGRR VKEVAVTAKT SLPDNDDDWI ETPELQDDDG EASSSGRSFQ 1401: YEDYDDDDVM APIDDFDGGG ESSKLVGRGE FSLHSDDEYE EEEEEEEDMN MKMDVNVVDD EDEDYINEDS YGRKQHGISI SNDAATRKRF NKFEDPDLTS 1501: SSSSDFQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)