AT5G43990.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SET-domain containing protein lysine methyltransferase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes SUVR2, one of the four closely related Arabidopsis SUVR proteins that belong to the SU(VAR)3-9 subgroup of SET-domain proteins. Proteins containing the evolutionarily conserved SET domain are involved in regulation of eukaryotic gene expression and chromatin structure through their histone lysine methyltransferase (HMTase) activity. SUVR1, SUVR2 and SUVR4 proteins contain a novel domain at their N-terminus, and a SUVR specific region preceding the SET domain. Localized to the nucleolus, maybe involved in regulation of rRNA expression. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SUVR2; FUNCTIONS IN: zinc ion binding, histone-lysine N-methyltransferase activity; INVOLVED IN: chromatin modification; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), WIYLD domain (InterPro:IPR018848), Pre-SET domain (InterPro:IPR007728); BEST Arabidopsis thaliana protein match is: homolog of SU(var)3-9 1 (TAIR:AT1G04050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17698454..17701733 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81984.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.80 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 740 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSYNLFHES NPTISFSFVG AETMAPNLHI KKAFMAMRAM GIEDARVKPV LKNLLALYEK NWELIAEDNY RVLADAIFDS HEDQAIQESE EKKADEVKED 101: EGCAAEVDRG KKKLHESIED DEDVMAESDR PLKRLRRRGE GGSALASPSL GSPTLEGPSI NDEENAPILL PYHPVPIEND HDAGELILTK VEPITNMPLS 201: SIPDSVDRGD SSMLEIDKSN GHVEEKAGET VSTADGTTND ISPTTVARFS DHKLAATIEE PPALELASSA SGEVKINLSF APATGGSNPH LPSMEELRRA 301: MEEKCLRSYK ILDPNFSVLG FMNDICSCYL DLATNGRDSA NQLPKNLPFV TTNIDALKKS AARMAYTSQA SNDVVEICSN EHMRDAENGA VGDSMALVVV 401: PECQLSADEW RLISSVGDIS LGKETVEIPW VNEVNDKVPP VFHYIAQSLV YQDAAVKFSL GNIRDDQCCS SCCGDCLAPS MACRCATAFN GFAYTVDGLL 501: QEDFLEQCIS EARDPRKQML LYCKECPLEK AKKEVILEPC KGHLKRKAIK ECWSKCGCMK NCGNRVVQQG IHNKLQVFFT PNGRGWGLRT LEKLPKGAFV 601: CELAGEILTI PELFQRISDR PTSPVILDAY WGSEDISGDD KALSLEGTHY GNISRFINHR CLDANLIEIP VHAETTDSHY YHLAFFTTRE IDAMEELTWD 701: YGVPFNQDVF PTSPFHCQCG SDFCRVRKQI SKGKNVKKRA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)