AT5G43940.2
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.855 What is SUBAcon? |
|
||||||
| Experimental Localisations and PPI |
|
||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||
| Description (TAIR10) | protein_coding : GroES-like zinc-binding dehydrogenase family protein | ||||||
| Curator Summary (TAIR10) |
Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility. | ||||||
| Computational Description (TAIR10) |
sensitive to hot temperatures 5 (HOT5); CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (InterPro:IPR014183), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alcohol dehydrogenase 1 (TAIR:AT1G77120.1). | ||||||
| Protein Annotations | |||||||
| Coordinates (TAIR10) | chr5:+:17684265..17686379 | ||||||
| Molecular Weight (calculated) | 42045.70 Da | ||||||
| IEP (calculated) | 6.94 | ||||||
| GRAVY (calculated) | -0.00 | ||||||
| Length | 391 amino acids | ||||||
| Sequence (TAIR10) (BLAST) |
001: MATQGQVITC KGTFILDPRT LTISAVAYEP NKPLVIEDVQ VAPPQAGEVR IKILYTALCH TDAYTWSGKD PEGLFPCILG HEAAGIVESV GEGVTEVQAG 101: DHVIPCYQAE CRECKFCKSG KTNLCGKVRS ATGVGIMMND RKSRFSVNGK PIYHFMGTST FSQYTVVHDV SVAKIDPTAP LDKVCLLGCG VPTGLGAVWN 201: TAKVEPGSNV AIFGLGTVGL AVAEGAKTAG ASRIIGIDID SKKYETAKKF GVNEFVNPKD HDKPIQEVIV DLTDGGVDYS FECIGNVSVM RAALECCHKG 301: WGTSVIVGVA ASGQEISTRP FQLVTGRVWK GTAFGGFKSR TQVPWLVEKY MNKEIKVDEY ITHNLTLGEI NKAFDLLHEG TCLRCVLDTS K |
||||||
| See Also |
|
||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)