AT5G43770.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
proline-rich family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:17588807..17589370 | ||||||||||||||||||||
| Molecular Weight (calculated) | 19680.60 Da | ||||||||||||||||||||
| IEP (calculated) | 4.44 | ||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||
| Length | 187 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLISANLMR GTFFVCSSFK SKPWSGRLIT AVKSVSCTSK PVRGLTNYST GVYFVSQTGP PEIKFPGGSP SEKELPSGPS RGPELAPLEV PELPNIPEIS 101: PSETPPEVTT VPSDPPPLGP PQTPGPEFPV PPSPSPPMPD TPNPPTPKTP PDVVPPIWEP PRPPDIFPPE SPPPGIDPPP PLGPTIM |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)