AT5G43660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.841 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G48740.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17536337..17538595 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47733.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.21 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 410 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFLVASNREI LKGILTGNDR QEVTVDGDRT VGGRDHQPPV TTTAAATTKM AIPRLSLLPN NEHNSDNYED LELEFSSSVL RSLERYLPPE ILTANREEKA 101: KFMSDILHKY ISREECAKAI RFKNYREWIM SNYQPRFREL YKLDPESLLL PCFRKAVREN TEESFRRIMF EPFPGVYVFK MFQPDFFQKL LVEVENMRKW 201: LHEAKLMIRK PNNKSKYGVV LDDFGMDIML KPLVEDFIFP ICKVFFPQVC GTMFDTQHGF VIENCEDRDA ELGFHVENSD ITLNVCLSKQ SEGGEILFTG 301: TRCNKHLKAG PKPEEIFEYC HEPGQAILHL GCHSHGAKAA ITSCSRANMI LWCINSLFRE MQTYDNEFRD WCGQCAREKK EKKSQSLASK RKVKKRKKDM 401: ILLKFIRCFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)