AT5G43610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.892 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : sucrose-proton symporter 6 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
sucrose-proton symporter 6 (SUC6); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport, transmembrane transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: leaf whorl, sepal, synergid, leaf, seed; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 7 (TAIR:AT1G66570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17519079..17521008 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52730.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.55 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 492 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSDLQANKDA AAVNRQSSSS SADLNGPSPM RKMISVASIA AGIQFGWALQ LSLLTPYVQL LGVPHKWSSF IWLCGPVSGL LVQPSVGYFS DRCKSRFGRR 101: RPFIAMGALL VAVAVVLIGY AADFGHSMGD KVDEPVKMRA VVIFALGFWI LDVANNTLQG PCRAFLGDLA AGDAKKTRTA NAFFSFFMAV GNVLGYAAGS 201: YTNLYKIFPF TMTKACDIYC ANLKSCFFLS ITLLLVVTII ALWYVEDKQW SPKADSDNEK TPFFGEIFGA FKVMKRPMWM LLIVTALNWI AWFPFLLYDT 301: DWMGREVYGG DSKGDDKMKK LYNQGIHVGG LGLMLNSIVL GFMSLGIEGI SRKMGGAKRL WGAVNIILAV CLAMTVLVTK KAEEHRRIAG PMALPTDGIR 401: AGALTLFALL GIPLAITFSI PFALASIISS SSGAGQGLSL GVLNMTIVIP QMVVSFGVGP IDALFGGGNL PGFVVGAIAA AISSVVAFSV LP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)