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AT5G43525.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Putative membrane lipoprotein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT5G43510.2); Has 47 Blast hits to 47 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB016875EMBL:CP002688EnsemblPlants:AT5G43525EnsemblPlants:AT5G43525.1
entrez:3771420GeneID:3771420GO:GO:0005576GO:GO:0031640
GO:GO:0050832Gramene:AT5G43525.1HOGENOM:HOG000015163KEGG:ath:AT5G43525
PaxDb:A8MRC6Pfam:A8MRC6Pfscan:PS51257PhylomeDB:A8MRC6
Proteomes:UP000006548RefSeq:NP_001032005.1STRING:3702.AT5G43525.1TAIR:AT5G43525
TMHMM:TMhelixUniGene:At.62361UniGene:At.63347UniProt:A8MRC6
Coordinates (TAIR10) chr5:+:17488149..17488516
Molecular Weight (calculated) 10372.70 Da
IEP (calculated) 9.38
GRAVY (calculated) -0.09
Length 90 amino acids
Sequence (TAIR10)
(BLAST)
1: MKLPIIFLTL LIFVSSCTSV LINGSSDEER TYSFSPRASP FDPRSLNQEL KIGRIGYCFD CARACMRRGK YIRTCSFERK LCRYSISDIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)