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AT5G43400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.938
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised conserved protein UCP015417, vWA
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised conserved protein UCP015417, vWA; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP015417, vWA (InterPro:IPR011205); BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein UCP015417, vWA (TAIR:AT5G43390.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGYQeggNOG:ENOG410ZQDJEMBL:AB025638EMBL:AY048243
EMBL:BT002275EMBL:CP002688EnsemblPlants:AT5G43400EnsemblPlants:AT5G43400.1
entrez:834358GeneID:834358Gramene:AT5G43400.1hmmpanther:PTHR31373
hmmpanther:PTHR31373:SF0HOGENOM:HOG000238835IntAct:Q94AE4InterPro:IPR002035
InterPro:IPR011205InterPro:IPR024553KEGG:ath:AT5G43400ncoils:Coil
OMA:DAMANSHPfam:PF11443PhylomeDB:Q94AE4PIRSF:PIRSF015417
Proteomes:UP000006548RefSeq:NP_199153.1SUPFAM:SSF53300TAIR:AT5G43400
UniGene:At.7153UniProt:Q94AE4
Coordinates (TAIR10) chr5:-:17426182..17428149
Molecular Weight (calculated) 74648.50 Da
IEP (calculated) 6.28
GRAVY (calculated) -0.39
Length 655 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSTTILLG PPSVAGNSPI IKPIHSPETH ISDENTLISQ TATLNLEEPP PMGLTENFSP TFLSSGNPCL DFFFHIVPDT SPDDLIQRLA ISWSHDPLTT
101: LKLICNLRGV RGTGKSDKEG FYTAAFWLYK NHPKTLALNV PALVDFGYFK DLPEILFRIL EGQNMERGKN RVWRKRVQRK FKGKREKKSE ISGEMEDRIL
201: ENAEEIGGSV DKVKARALRK QREFEKAKKA VTRYNSDANY RLLFDRIADL FAVLLKSDLK YLNSNGLTKI SLASKWCPSV DSSYDKATLI CEAIARRMFP
301: REEYEGIEEA HYAYRIRDRL RKEVLVPLHK ALEFPELFMS AKEWNLLKYN RVPSVAMKNY KKLFEEHDSE RFTEFLEDVK SGKKKIAAGA LLPHQIINQL
401: EDDSGSEVGA EVAELQWARM VDDLAKKGKL KNSLAVCDVS GSMSGTPMEV CVALGLLVSE LSEEPWKGKV ITFSENPELH IVTGSSLREK TQFVREMEWG
501: MNTDFQIVFD RILEVAVENN LTDDQMIKRL FVFSDMEFDD AMANSHSEVS YHLSVEDRLK ISKERSKEKW ETDYEVVQRK YKEKGFQNVP EMVFWNLRDS
601: SATPVVANQK GVAMVSGFSK NLLTLFLEEG GIVNPEDVMW IAIKGEEYKK LVVFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)