AT5G43240.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.489 nucleus 0.262 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF674) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17353077..17354765 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 56966.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.30 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||
| Length | 512 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSATLKNPVI KLKLLIDEEK NKVVFVEAGK DFVDLLFSFF TLPMGTIVRL LEMYKKSQKI AIGCFSNIYA SVVSMGIEHF LTEACKQMLL YPGSLNHEKC 101: RNLKLRVDDS EATKYFVCPK FVEREQCTES YSNFNTSRCS CGVLMNEVTQ LDGRGGLASA GNGVEGGVFV RSDHTSFMIT DDLKVEITSV RLTLNVLKDL 201: GYVDCEKLDE KIHDVNLEEV PTLLECLSTS DNPLTDTFLK KKSSYSTKRI QKLPSPGLCE DREESTPDQT ITLNVVKKEG NILFVECGDD FVDLLFTFLA 301: IPLESAWGIA GDGIIIGCIG NLSKSFKDLS VDPGREAKCV LPHYYKCQKQ LLDAVTTHKP PTFYLYVSSM ASNHIREYRL SEDSSKPLVY FWDELMPMIS 401: IDPKSKGSTN TTDESTIPSG GFMKRGTKFM ITDDLIITPL NSTSTIGLVK EKQIRLDDVE VQEIIIRKEE AIRLLQASLV TCSALSTGLL AIESASTSVP 501: QSANLKKPKI ET |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)