AT5G43230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.539 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01810.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17349125..17352747 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 94445.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.90 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||
| Length | 848 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVLGLRTKSR RDNGVFVEYL ISIKELKPWP TSQVPAQCVL LKWENGENNS GSFIAVVGKD TIMFNESFRL TLTLEPKVGS DNKFHKNLLE LHVYDAKKKD 101: KGVKNKLLGT ASVNLADFGL LTNSVPVGAP FTFKKSSRND ASSEIYLTVE PAGEEDYDEG NRSSGSSQPK MSFSRRSVDG SEFSLASLTD DDDDASSVSS 201: STRRVSFSAM CDANSTNTEA MTNGDEKKGW KHVTLKHSNN EAALVSEIEN LLREEERKRQ SNQPVIVSAE IDQKQKEDTN AFKLKKQFSE IKSGPLSLPP 301: DAAKKQMKLR TNTLALGRKT LGMEGIPRLK QLKSIQLHFD GHKDDSSHKK ASGVINKVGL ITPQDSKTET LEDELKEAAV LEAAIYSVVA EHTSSMSKVH 401: APARRLARFY LHACKGNGSD HSKRATAARA AVSGLILVSK ACGNDVPRLT FWLSNSIVLR AILSRGMEKM KIVPEKAGSD EWEDPRAFLA ALEKFESWIF 501: SRVVKSVWWQ SMTPHMQSPA VKGSIARKVS GKRRLGHRNQ GLYAIELWKN AFRAACERLC PLRGSRQECG CLPMLAKLVM EQLISRLDVA MFNAILRESA 601: GEMPTDPVSD PISDINVLPI PAGKASFGAG AQLKNAIGTW SRWLEDQFEQ KEDKSGRNKD EDNNDKEKPE CEHFRLFHLL NSLGDLMMLP FKMLADKSTR 701: KEVCPTLGPP IIKRVLRNFV PDEFNPHRIP RRLFDVLNSE GLTEEDNGCI TVFPSAASPT VYLMPSTDSI KRFIGELNNP SISETGSSVF KKQYTSDDEL 801: DDLDTSINSI FSAPGTTNSS EWMPKGYGRR KTVRYQLLRE IWKEDGIQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)