AT5G43090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 13 (PUM13); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 14 (TAIR:AT5G43110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:17295933..17298171 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59940.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 527 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDNKFYVNTN GERNIWSTAA EENMTTAASS SQSQPPQMQS SKFHQPENHI HINDGFSSGA FDLQTLESSF RGLSFADSNV HQNGNPILPA HQYNQVFNGG 101: GGSYGDGYLF PPSGSYHHYE LKDLQRFNQN QQRLSYQNDY VNQSYRYDTI GGGNGMLNNS FLNGVPCASR NNVSDYYTNI FGYGVNNSWR SNEGCTYNQD 201: QAASSMENGR GSYFSIATDR VWSKELEKTI FVGTKETIDM IFDGLIVGIC ELMVDPFGND VVKLLIGKCS SEQIILIVDV VTRHISKFVN ICFNPIGTLA 301: IQVLLTSIHE RANNQIPRIM DAISSVALQL TRNTNAKYVI LACFRMFTSS QCRRLLEVVS QHCYQIAIDQ NGCCLLQQCF DKERVPNHEI RQRLISEVIE 401: HALKLCLNCH GNYVVQYVVE LDNQHETDLL VNKLLRNYAH LARNKYGSHV VQKLLKLRGI DSKLIVVDLL RGIDTLLLDP FGNYVIQTAW FVSKEDVRQM 501: LRYYIERNIR LMRCNKFGNK ILEKLNI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)