AT5G43030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.982 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, root, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G43040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17258991..17260685 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64599.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.49 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEEIADGGI LSPFHNHPLY PTDDSSTPCV GCGEETAGKH ACHICHEINV HKGCLEIINP SSPAHPLSLT DRFDDYIKCT ICHWVFHRYM YYCSFSGLPV 101: CKQCVRKPFI LDPEKAHEHP LLIFLKGSFS FPCDACGVND ANSCLCLCIP CRFTIHMDCV YLPRVICVNR HDHRISHVPR LGSGNWSCGV CRKEVNGMYG 201: AYSCLTCTFV VHSRCAIRSN VWDGIELEGV PEEDPANLLP FYVVEEGLIK HFTHEHNLRL VNEDDILHDI SKQCYGCVLP IFFNSCYICT LCDFVLHETC 301: ANLSKKKRHP SESRRLTLYD EYYVNSLMRK GPFICFVCNQ RCSGFAYVED SERRDGLKID VRCVSIYDGY VHKSQPHSML VVPDNWSTCS ICGKGGEHMW 401: SLTGQDDLFM CYKCATIPEL AMHKYDVHPL SLQFGEMAKG DYWCDICEKI LDPQKWFYTC DLCCTTLHID CVLGMEPYMR VGSTFHLKRF VLEVLSNYSA 501: SRPHCYTCSS RINDLIVYKS KDVYFCSLMC IKKSPKLDSG LYWSNMYDFT EPDLHLSNFF HDDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)