AT5G42930.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.952 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G56630.1); Has 1515 Blast hits to 1509 proteins in 328 species: Archae - 0; Bacteria - 466; Metazoa - 48; Fungi - 299; Plants - 385; Viruses - 5; Other Eukaryotes - 312 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17210738..17214152 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54335.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||
| Length | 467 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRTKNYFVL DPREATVSDL IHLLFSSDLG DRKFIHSSEE RIEDDLSRFR RRWIIFVSIV IQKLIILFKK PLYFVGFSLA CWLNLLSSNG GFLMILPNLF 101: KGNIIWPEKA SATFASLNGN LDRRVELNPK VERGSKRYKA MLSIMASKLS YENINFVSSV LHNHWKMDLL GFYSCWNGYQ KQRSTEVIVI KDTSTDPNLI 201: IVSFRGTDPF DADDWCTDLD LSWYEVKNVG KIHGGFMKAL GLQKEGWPKE VNLDETQNAT TLYAYYTVRR HLKEILDQNP TSKFILTGHS LGGALAILFT 301: AVLVMHDEEQ MLERLEGVYT FGQPRVGDEE FGNFMKDSLK KFDVKYERYV YCNDMVPRLP FDDKTLMFKH FGACLYYDSF YKGKVEEEEP NKNYFNLVWV 401: LPKIMNALWE LIRSFVMPYW KGGEFREGWF LRCFRVVALL IPGLPAHFPN EYINVTLLGD LPDSHLD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)