AT5G42430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.731 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G30920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:16971312..16972499 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45734.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.23 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNGEENSDSI PIDLILEILS RLPAKSITRF HCVSKLWGSM LCRPYFNELF LTISSARPRL LFAFSKHGEW RFFSSPQPQN PYGKSSFVAT ADFHTKFSQN 101: LNICNYTSGL VYFSAMWITK ADVICNPSTG HYAMLPKLLL TYGETRSFFL FDPVGKQFKV LLMNKINNNE TKDIHILTLG TRKVRWRKIQ QCPLIHIVSH 201: EWICINGALY YIAYNIDDFL GYIVCFDVRS EKFKCLNLNQ DCFSERSTKL IYYKGKLGVV NLKYAHGGGF PLKLCMWVLE DVEKQEWTTS VYTLRDEDRV 301: VKVYYDLFIV GITATGEIVL AKKKVCKPFY VFYFNLERNT LLSVEIQGFG EYQSCCSVHA FVDHVEDLNV YAFVEHMKKT YEYDATSISP SEQKL |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)