AT5G42210.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.906 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G16970.1); Has 1412 Blast hits to 1411 proteins in 523 species: Archae - 2; Bacteria - 866; Metazoa - 276; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:+:16867865..16870568 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 31257.90 Da | ||||||||||||||||||||||||
IEP (calculated) | 8.75 | ||||||||||||||||||||||||
GRAVY (calculated) | 0.64 | ||||||||||||||||||||||||
Length | 282 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MCIRLRQSFC SIFIYWRDIS AAMGILSTLY MRLFLPDSIR DNSLGAPIVI NEKLSSPLLE DCPGHRNRIF RAIRLVHEMA SLMRSSVPLF QVAMVSFFSS 101: LAEAGLHASS MYYLKAKFHF NKDQFADLMI IVGASGSISQ LLFMPVLVPA LKEERLLSIG LFFGCAHMFL LCVAWSSWVP YMAAIFALFS IFPSSCMRSI 201: VSKQVASYEQ GKAQGIISSI CSLANVISPL AFSPLTDWFL SERAPFNFPG FSIMCAGFAM TIAFIQSLMI RAATPISVMG SP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)