AT5G41690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G45100.1); Has 16649 Blast hits to 9973 proteins in 510 species: Archae - 6; Bacteria - 487; Metazoa - 7833; Fungi - 3042; Plants - 3517; Viruses - 0; Other Eukaryotes - 1764 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16670126..16674189 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65294.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.18 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 567 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKSNSQGKR NPQYGLEANP ILKRHKKINK KKVTTKAIAF SLQQNDLLVT KSDQANLISV KEAAVREKTL FVANLPYETK IPNIIDFFKK VGEVVRVQLI 101: VNLKGKLVGC GFVEFASVNE AEEALQKKNG ECLDNNKIFL DVANKKATYL PPKYCIDHKV WDKDYRRLES HPIEEDERPP NSVEEVLFVA NLSPQTKISD 201: IFDFFNCVGE VVSIRLMVNH EGKHVGYGFV EFASADETKK ALENKNGEYL HDHKIFIDVA KTAPYPPGPK YNLVEKLCYE DYLRRESLPI DEDETPPEFV 301: EAVGVRKKTL FVAHLSRKTE ITHIINFFKD VGEVVHVRLI LNHTGKHVGC AFVEFGSANE AKMALETKNG EYLNDCKIFL EVAKMVPYPP PKYCIHHKVW 401: YEDYLRRESL LIEENETEEG LDDTPALVEE FAVRKKTLFV ANLSPRTKIS HIIKFFKDVA EVVRVRLIVN HRGEHVGCGF VEFASVNEAQ KALQKMNGEN 501: LRSREIFLDV VELAPYPLRP KYNHAEKLWH ERESLLKKQK EYEMLSERTE FCGKKIIFSY DDEDHMF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)