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AT5G41640.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.911
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF626)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF626); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF626, Arabidopsis thaliana (InterPro:IPR006462); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24388.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB005233EMBL:CP002688EnsemblPlants:AT5G41640EnsemblPlants:AT5G41640.1
entrez:834166GeneID:834166Genevisible:Q9FFR6Gramene:AT5G41640.1
hmmpanther:PTHR31260KEGG:ath:AT5G41640PaxDb:Q9FFR6Pfam:Q9FFR6
PRIDE:Q9FFR6PRO:PR:Q9FFR6Proteomes:UP000006548RefSeq:NP_198979.1
TAIR:AT5G41640UniGene:At.55305UniProt:Q9FFR6
Coordinates (TAIR10) chr5:-:16653337..16654635
Molecular Weight (calculated) 22986.90 Da
IEP (calculated) 8.80
GRAVY (calculated) -0.21
Length 197 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRLVQTMLL WLKSEKGFDT TEASDGPELQ KSICDKRWSP CCTLVRLYAR MGLHRYNLLK LSRVKKYNMS THYAAFATTH RSNGKYHDLS DLKIFESSED
101: VEPPNEVSLN VINVIVYIVY KDFYESRLVR MLIAKLLLNE ASMSIMDASL SRVEIRLSNP IWVWSDIYEC PTQKLNDMSF SYIPETYLVI KIKSTKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)