AT5G41610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cation/H+ exchanger 18 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Putative Na+/H+ antiporter family | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cation/H+ exchanger 18 (CHX18); FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 17 (TAIR:AT4G23700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16638554..16641146 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87388.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 810 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATNSTKACP APMKATSNGV FQGDNPIDFA LPLAILQIVI VIVLTRVLAY LLRPLRQPRV IAEVIGGIML GPSLLGRSKA FLDAVFPKKS LTVLETLANL 101: GLLFFLFLAG LEIDTKALRR TGKKALGIAL AGITLPFALG IGSSFVLKAT ISKGVNSTAF LVFMGVALSI TAFPVLARIL AELKLLTTEI GRLAMSAAAV 201: NDVAAWILLA LAIALSGSNT SPLVSLWVFL SGCAFVIGAS FIIPPIFRWI SRRCHEGEPI EETYICATLA VVLVCGFITD AIGIHSMFGA FVVGVLIPKE 301: GPFAGALVEK VEDLVSGLFL PLYFVASGLK TNVATIQGAQ SWGLLVLVTA TACFGKILGT LGVSLAFKIP MREAITLGFL MNTKGLVELI VLNIGKDRKV 401: LNDQTFAIMV LMALFTTFIT TPVVMAVYKP ARRAKKEGEY KHRAVERENT NTQLRILTCF HGAGSIPSMI NLLEASRGIE KGEGLCVYAL HLRELSERSS 501: AILMVHKVRK NGMPFWNRRG VNADADQVVV AFQAFQQLSR VNVRPMTAIS SMSDIHEDIC TTAVRKKAAI VILPFHKHQQ LDGSLETTRG DYRWVNRRVL 601: LQAPCSVGIF VDRGLGGSSQ VSAQDVSYSV VVLFFGGPDD REALAYGLRM AEHPGIVLTV FRFVVSPERV GEIVNVEVSN NNNENQSVKN LKSDEEIMSE 701: IRKISSVDES VKFVEKQIEN AAVDVRSAIE EVRRSNLFLV GRMPGGEIAL AIRENSECPE LGPVGSLLIS PESSTKASVL VIQQYNGTGI APDLGAAETE 801: VLTSTDKDSD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)