AT5G41310.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.905 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (TAIR:AT1G63640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16516634..16522392 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108121.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.95 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 961 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNRIKKGSS MIGVYGRSDG SSSIQSSNGS ESRESIDDNK QGHQSLVEWL NETLPYLNLP WEASEEELRA CLVDGTVLCN LLNQLSPGSM RMGGSFEPGC 101: VNIERFLAAM DEMTLPRFES LKALKASFSD DGYDKNTLSA RRRWSLPADH SKGVDSNFND GGSQFIEASE INTSHHSLQN TSTRSLFDML DRLLDESSQK 201: MNVSHVYVSI LRGIVQVVEQ RISNQAENLK NQNILFRVRE EKYRSRINVL ETLASGTTDE NEVRRKRCAP NRKGKERSNA ELSKLKQELE IVKETHEKQF 301: LELKLNAQKA KVELERQVKN SELRVVEAKE LEKLCETKTK RWEKKEQTYK RFINHQTEAL QELKATSMSL KHDVLKIGEN YFLDLTYYGI KLRGVAHAAK 401: NYQIIIEENR RLYNEVQELK GNIRVYCRIR PFLQGQNKKQ TSIEYTGENG ELVVANPLKQ GKDTYRLFKF NKVFGPESTQ EEVFLDTRPM IRSILDGYNV 501: CIFAYGQTGS GKTYTMSGPS ITSEEDRGVN YRALNDLFHL TQSRQNSVMY EVGVQMVEIY NEQVRDLLSQ DVPDASMHSV RSTEDVLELM NIGLMNRTVG 601: ATTLNEKSSR SHSVLSVHVR GVDVKTESVL RGSLHLVDLA GSERVGRSEV TGERLKEAQH INKSLSALGD VIFALAHKNP HVPYRNSKLT QVLQNSLGGQ 701: AKTLMFVQIN PDEDSYAETV STLKFAERVS GVELGAARSY KEGRDVRQLM EQVSNLKDMI AKKDEELQKF QNINGIQKRG LSKLRIVSPP RRHSLGGALT 801: NSPRRRQGPG LLGRTTSDIH RHQNESRSSS KFSGGAKDNN IFEDTELLGF EESNNEERLS DISDSCLSMG TETDGSISSG AMELTLFPET SNPPEMFEQS 901: EQNDKAHVGV GPSKPLKHTP KPDISKPSRL SISTTSSKAL TSSKRPVTGI SSSVKPLNRK R |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)