AT5G41250.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.882 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: root hair specific 8 (TAIR:AT1G63450.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16501217..16502902 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65211.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.72 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSKRKSRTS KTIEDSCIHL CSVFFRFLYY TLPALFLFFF LLYLCLSFTT GISYNNFHMC IFSRKFNDPY CNTAGSKPGF QIISEENVTF AGEIAGDRVS 101: KDHNKILNSV PVQEHKTKNK VDLNSLIELK AEEEYSKYIK PTSEDEGYAL RAAIKYLYLQ RSWLSPGDEN LNKPRSCEGK GVYVYDLPSK FNSDLLVGCN 201: DILPGVNLCS YFKNEGFGEA IKNLGKGWFA THMYSLEPIL HSRVLKHPCR VYNETQAKLF FVPYYGGYDV LRWHYRNVSE DVKDRLGIEV LKWLNSKESW 301: RRNAGKDHVF VLGKITWDFR RDKDPWGSRF LELQEMQNPT KLLIERQPWQ VNDIAIPHPT YFHPRTDDDI TRWQIKIMSK LRRNLVSFAG GARPDNPNNI 401: RSTLIEQCIS SNQCRFLNCT NESCTNPKNV LDLFQDSEFC LQPPGDSATR RSVFDSLISG CIPVIFTPYT AYYQYAWHLP EDHRKYSVYI SEQDVKEKRV 501: NVVEILKAKT LKEKKDMKSY IVQQLLPGLV YGDSNAKFEK FRDAFDITFD CLLKKINRSV V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)