AT5G41180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.772 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : leucine-rich repeat transmembrane protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G63430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16484045..16487228 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74332.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.32 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRLYLSSTMQ LSLMSLVLGF LFVSCDAFAS KEVEAVRRFK EAIYKDPLLV MSNWNVPNLS PCDWNGIKCS PSKDHIIKIN ISGTSMRGFL VPELGQITYL 101: QELILRGNIL MGTIPKEIGK LKKLKILDLG NNHLTGPIPA EIGKLSRIKT INLQSNGLIG KLPPEIGNLK HLKELLIGRN RLRGSIPIAA KTSKKYASNP 201: SANISGLCKS SLFKVADFSY NFFEGRVPSC LDYLPITSFQ GNCMKTMDVK QRPLSECARL AVTVAKKKHR ASRQTWLRNF EIVTGSSVGL LFLVVMFSAC 301: SLCKIKRSLI VPWKKSASEK EKFTVYVDSE MLKDVSRYTR QELEVACEDF SNIIDSSAES QIYKGTIKGG TEIAVISLCV KEENWTGYLE LNFQREVAAL 401: ARLNHENAGK LLGYCKESTP FTRMLVFEYA SNGTLYDHLH YADGSLVSWA KRMKIVIGIA RGLKYLHTEL HPPFTVSELS STAVYLTEDF TPKLVDFECW 501: KIIQVRSEKN LKNICNEGAI CVLPNAMEHR DMDLQGNIYS FGILLLEIVS GRPSYCQDRG CLVEWVREKN LGAPDVMASL VDPELKHFKQ KELEAVCEVA 601: SQCLNLDQNE KDKDKLSCSI QALCETLESR ITVSISAEFK SSSLAWAELA LASPSNEDDD DRSK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)