AT5G40890.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 ASURE: vacuole What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chloride channel A | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the voltage-dependent chloride channel. Also functions as a NO3-/H+ exchanger that serves to accumulate nitrate nutrient in vacuoles. Mutants homozygous for the T-DNA insertion mutation have reduced nitrate uptake capacity in high nitrate environment and exhibit hypersensitivity to chlorate. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chloride channel A (CLC-A); CONTAINS InterPro DOMAIN/s: Chloride channel, core (InterPro:IPR014743), Chloride channel, voltage gated (InterPro:IPR001807), Chloride channel ClC-plant (InterPro:IPR002251), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: chloride channel B (TAIR:AT3G27170.1); Has 6603 Blast hits to 6339 proteins in 1710 species: Archae - 113; Bacteria - 4208; Metazoa - 956; Fungi - 346; Plants - 344; Viruses - 0; Other Eukaryotes - 636 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16381645..16383821 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70449.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.35 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 643 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVFTGANLGL TLVATVLVVY FAPTAAGPGI PEIKAYLNGI DTPNMFGFTT MMVKIVGSIG AVAAGLDLGK EGPLVHIGSC IASLLGQGGP DNHRIKWRWL 101: RYFNNDRDRR DLITCGSASG VCAAFRSPVG GVLFALEEVA TWWRSALLWR TFFSTAVVVV VLRAFIEICN SGKCGLFGSG GLIMFDVSHV EVRYHAADII 201: PVTLIGVFGG ILGSLYNHLL HKVLRLYNLI NQKGKIHKVL LSLGVSLFTS VCLFGLPFLA ECKPCDPSID EICPTNGRSG NFKQFNCPNG YYNDLSTLLL 301: TTNDDAVRNI FSSNTPNEFG MVSLWIFFGL YCILGLITFG IATPSGLFLP IILMGSAYGR MLGTAMGSYT NIDQGLYAVL GAASLMAGSM RMTVSLCVIF 401: LELTNNLLLL PITMFVLLIA KTVGDSFNLS IYEIILHLKG LPFLEANPEP WMRNLTVGEL NDAKPPVVTL NGVEKVANIV DVLRNTTHNA FPVLDGADQN 501: TGTELHGLIL RAHLVKVLKK RWFLNEKRRT EEWEVREKFT PVELAEREDN FDDVAITSSE MQLYVDLHPL TNTTPYTVVQ SMSVAKALVL FRSVGLRHLL 601: VVPKIQASGM SPVIGILTRQ DLRAYNILQA FPHLDKHKSG KAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)