AT5G40720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF23) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF23 (InterPro:IPR008166); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G27330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16298063..16299893 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66973.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.89 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||
| Length | 583 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKNRRKRGGL SSVDVVVSWR RFFRFVSLFV FSFVLFSAFF IFLGKIRPVV RSSVNAVLRG SVPVVKVITI HEAVEFPDQT LIFLKYPPSS RFFTKEDLFC 101: VFSDVNDSSK LFKELPFAVE TDDYGRQIVR CSAVPRGNTV SLAVSRWRVD DYNLQVGLTH RWDWLVYDAV IDDDNSTVVF VKGLNLRPGK VADASRYECV 201: YGWDFTKPKL LLRAQAISAA QEIVRCKTPL TVLDGPRRAQ SQPVKVSVRI KGSGMLPSVA HPIKRPGRIK VSKTFETCVC TMTRNAANVL REWVMYHAGI 301: GVQRWFIYDN NSDDDIVSEI KNLENRGYNI SRHFWPWIKT QEAGFANCAI RAKSDCDWVA FIDVDEFFYI PSGQTLTNVI RNHTTTPSSS GEIGEIRTPC 401: HSFGPSGLRD PPRSGVTAAY TCRMALPERH KSIIRPESLN ATLINVVHHF HLKEEFAFVD VDKSTMVINH YKYQVWDIFK EKFKRRVATY VADWQNEENV 501: GSKDRAPGLG TRPVEPTDWA ERFCEVSDIG LRDWVLEKFS DRKTQRLVWE REARRVEDEV IVQMGSWADK RVGRKRKKQL KAQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)