AT5G40290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HD domain-containing metal-dependent phosphohydrolase family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HD domain-containing metal-dependent phosphohydrolase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607); BEST Arabidopsis thaliana protein match is: HD domain-containing metal-dependent phosphohydrolase family protein (TAIR:AT5G40270.1); Has 2645 Blast hits to 2636 proteins in 969 species: Archae - 283; Bacteria - 1672; Metazoa - 168; Fungi - 16; Plants - 55; Viruses - 3; Other Eukaryotes - 448 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16105259..16108501 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51863.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.95 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEYCNEDLS CFPANELRFS KHVHDNVHGN IYLDPLCLKF IDTEQFQRLR ELKQLGVTNM VYPGAVHSRF EHSLGVYWLA GETVQRLKTF QGMELGIDNH 101: DLQTVRLAGL LHDIGHGPFS HMFEREFLPK VISGCQWSHE LMSINMIDYI VDTHHIDVDA KMLKRVKDMI LASTEVSELK GNAEKRFLYD IVANGRNGID 201: VDKFDYIVRD SRACGLGCNF QFQRLTEPMR VIDNEICYPA KEYRTVHKLF ATRADLCGTV YMHPKKMAIE LMIVDAMVKA NNVLEISSMI NDPSQYWKLD 301: DTILKTIERS PDPELAEAKE LILRLSRRHL YQFCNEYAVP KDKIDHFKPI TPEDIICFSE EDIAVTNVKI DLARGRENPL ECINFYKDYN SAEKFVIPED 401: RVSHLLPTTY QEMIVRVYAK KPELVEAVSE AFENFQMRTY GIKAQVLM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)