AT5G40070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MADS-box family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MADS-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: AGAMOUS-like 75 (TAIR:AT5G41200.1); Has 52 Blast hits to 49 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 2; Plants - 43; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16039179..16039747 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 17878.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.70 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.01 | ||||||||||||||||||||||||
| Length | 157 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTMRSSLPSS SSSYSLASTS LSNRLETQEK RYSSWVQNKK KKKKNKGLKN PNKKRKTSLK KNKGLKNPKR KTSLNNVLKY PLADHYSPDQ ISQLIQSLEP 101: HVSKTQSLNP SQFSLFMYNH GDNTLSQIPV TASNFNQDFS ALLQESGLMK QELYGYD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)