AT5G40050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box/FBD-like domains containing protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G25860.1); Has 1563 Blast hits to 1537 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1563; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16032083..16033551 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47925.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.69 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METKRVLSSS GSIDSISPLP DELLSHILSF LPTKRAASTS ILSKRWRTLF PLMNHLCASL YLDDTDLLYP ERQTEEEYYV IHNSFRNFVD KTLSGCNNNS 101: LKKFSLTYED DDVQRMCLTT GMMSKALEQG VSDLELYIYM PLMYEPPRLL PDTVFINNTL VKLTLGTELC LGRSPWENLE ELYIHHIYIE DRDEEFNIHT 201: APHYIAHNIK KLTVCYNNDV QAPRILSIYT PNLVYLDYSD YLTCLYNSEN HFNDLLEARL DLAFARAGRW GDEHDTCLKI MNSITNVQIL HLSCFTVENL 301: ATLHFEGSEK EYWQLLCNMI EKSPKLETLV LEGLYGISDC EVGIDGGNMV KVVEIQEYKG RLEELNQVKC FLREMENLEE VKVNTSDEIE NKLQLTNDLL 401: ALLPKRSSKC NIHVL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)