AT5G39980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G62930.1); Has 49138 Blast hits to 14545 proteins in 315 species: Archae - 6; Bacteria - 81; Metazoa - 702; Fungi - 707; Plants - 45788; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:16001036..16003072 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78277.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 678 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYIEIASSSS LSLPLLPLTR PHIYTSIPFS TIPEARQRNL IFTVSASSSS ESTQNKKVWR KQPEKNTTSS FQALRKHRRY QRSAFLDHNV DMDELLASIH 101: QTQNEKELFS LLSTYKDRQL SIRFMVSLLS RENDWQRSLA LLDWVHEEAK YTPSVFAYNV VLRNVLRAKQ FDIAHGLFDE MRQRALAPDR YTYSTLITSF 201: GKEGMFDSAL SWLQKMEQDR VSGDLVLYSN LIELSRRLCD YSKAISIFSR LKRSGITPDL VAYNSMINVY GKAKLFREAR LLIKEMNEAG VLPNTVSYST 301: LLSVYVENHK FLEALSVFAE MKEVNCALDL TTCNIMIDVY GQLDMVKEAD RLFWSLRKMD IEPNVVSYNT ILRVYGEAEL FGEAIHLFRL MQRKDIEQNV 401: VTYNTMIKIY GKTMEHEKAT NLVQEMQSRG IEPNAITYST IISIWGKAGK LDRAATLFQK LRSSGVEIDQ VLYQTMIVAY ERVGLMGHAK RLLHELKLPD 501: NIPRETAITI LAKAGRTEEA TWVFRQAFES GEVKDISVFG CMINLYSRNQ RYVNVIEVFE KMRTAGYFPD SNVIAMVLNA YGKQREFEKA DTVYREMQEE 601: GCVFPDEVHF QMLSLYSSKK DFEMVESLFQ RLESDPNVNS KELHLVVAAL YERADKLNDA SRVMNRMRER GILKPFPG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)