AT5G39910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pectin lyase-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT3G15720.1); Has 3880 Blast hits to 3866 proteins in 466 species: Archae - 6; Bacteria - 1031; Metazoa - 13; Fungi - 1258; Plants - 1455; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15979412..15981671 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 41951.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||
| Length | 373 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI 101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH 201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK 301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)