AT5G39870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.606 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1216) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1216); LOCATED IN: endomembrane system; EXPRESSED IN: petal, male gametophyte, flower, cultured cell; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28980.1); Has 120 Blast hits to 86 proteins in 18 species: Archae - 2; Bacteria - 5; Metazoa - 4; Fungi - 1; Plants - 88; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15968622..15970011 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 32978.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.65 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||
| Length | 290 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPRFQHFLCF TILVATITFF KVASAHVKIK PALPQIEDPL TVKDVESYTI KVVTTFLVEL EKECPKTEKF KVFFEKLKAY SKYLCPVSKA KGYKSDMKAK 101: AGSLFEAMSA LISVKHRSKE GSVNKSLQRE KMEAMNTINL LQSVGEKIAG GRSNKTETNG VAKLTVEQQK EMKDGILKWL QVITRIVKTN VEINLKSSSK 201: SQTTQESKEE KSSTQTQIKR RSEREYAQIT ALPRGSRVTN KGNINGILKS ARNSPKEIDD HGNKRRKPKK QYKFKEGDEP KQIIKKKFQN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)