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AT5G39620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 0.619
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RAB GTPase homolog G1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RAB GTPase homolog G1 (RABG1); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog 7A (TAIR:AT2G21880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNZVeggNOG:KOG0394EMBL:AB012243EMBL:AB071853
EMBL:CP002688EnsemblPlants:AT5G39620EnsemblPlants:AT5G39620.1entrez:833958
Gene3D:3.40.50.300GeneID:833958Genevisible:Q948K6GO:GO:0005525
GO:GO:0005622GO:GO:0005886GO:GO:0007264GO:GO:0015031
Gramene:AT5G39620.1hmmpanther:PTHR24073hmmpanther:PTHR24073:SF462HOGENOM:HOG000233968
InParanoid:Q948K6InterPro:IPR001806InterPro:IPR005225InterPro:IPR027417
KEGG:ath:AT5G39620KO:K07976OMA:MGNKTDVPaxDb:Q948K6
Pfam:PF00071Pfam:Q948K6Pfscan:PS51419PhylomeDB:Q948K6
PRIDE:Q948K6PRO:PR:Q948K6PROSITE:PS51419ProteinModelPortal:Q948K6
Proteomes:UP000006548RefSeq:NP_568566.1SMR:Q948K6STRING:3702.AT5G39620.1
SUPFAM:SSF52540SwissPalm:Q948K6TAIR:AT5G39620tair10-symbols:AtRABG1
tair10-symbols:RABG1TIGRfam:TIGR00231TIGRFAMs:TIGR00231UniGene:At.26413
UniProt:Q948K6
Coordinates (TAIR10) chr5:-:15864166..15865782
Molecular Weight (calculated) 23497.10 Da
IEP (calculated) 8.10
GRAVY (calculated) -0.50
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKTKLKIIL LGDSGVGKTS LLKRYNDKDF KQLHNSTIYV DLVTKEICIA ERQVILQIWD TAGQERFKSL PSRFYRDTDC CVLVYDVNTL KTFESIDNWH
101: DEFIKQANPE TPTKFPFVLM GNKTDVNNGK PRVVAKEIAD QWCGSKGNIV YFETSAKAKI NVEEAFLEIA KKALTNERQI DDMERYRSVV PTIEKETPRS
201: RCSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)