AT5G39540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.780 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box associated ubiquitination effector family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 63 (TAIR:AT3G55210.1); Has 141 Blast hits to 139 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15833743..15834420 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 22417.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 196 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFSNPTIMS FEVRSEKFDT IALPSGSFAN MLIPYQGRLA CVTNTMKNDV NGGIILWTLD DAEKHIWSCK LFLAPFAHMV IIVCMYVLLS HNSNKDYNFC 101: KIYLTPQAIK KKKEVEEEKK KQKKGEAVVS VAHVEALEEQ QPCNVEYHQP LAPLDSCQPQ RHDLEYQQQQ FCPGPLDSYQ PHPHDMESQQ PHNPLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)