AT5G39460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.930 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G39480.1); Has 56 Blast hits to 54 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15788289..15790004 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64364.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.00 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||
| Length | 571 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNKESFGAC LLLTLPEDVF AVISRFLSPS DICNLILCGK SLCALVDSEK TWLVQCEEVK VLPLIELVQW RIGISSYKAL CRFLVEVVKP LLGIWVQENP 101: ELGNVVYVMP GFLSVVGCRI IPQKVAPLWI QEGQVKWSPV FEIICGFDGS KGFFLHGRDK QGSFLYPGFV MDIEKSCNVL LLEVEPRSEK SSCNEIEREV 201: GDPFGDLDFS DRMNLLDIVT KHVSLRVDEP LTGNLFPTRS KYDEAMMLER RNMLLKMLKF GGNWKHINLE EDEQLCYNHI EIDIKKLLEN LGDDIDNMED 301: IEDQIEVTPR KKSFRRFLRS GIKHILGKFS SSKINSPSSS ETRRSNRQSF LSSGNTFCLS LKASCTLMSS YEGWPIMSAD NFSLHKLPMK KPLDHDVYAG 401: LWGGTFGWPP GKDIEDESLL LLMLTYGESE EGSERILFGT KILSYFAEHP NGSSMFVVNI DTPSLEPFPF DTDGRDFEHS YTGEGIADGY GFRYPGSKPG 501: SLFVSSNDLL AFVWQGTEDV ITLQRINLGE ILKKSLGSCV SPLLPTKNFT YTKRSYSNVF AKSSTYSSSS E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)