AT5G39430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.977 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1336) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein of unknown function (DUF1336); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1336) (TAIR:AT3G29180.2); Has 313 Blast hits to 313 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:15775302..15777599 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 58066.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.06 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||
| Length | 511 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTCMSTHSR RLRPRRKGRR RFSKNISKVS DIRRLSDVGI QTSFDISQND AWFDSSSLFS DSDDDFISLH EADNVWLEGG VMGKIPNGQV VEFEASSCIV 101: DGNGNYEEYH ESYLKIDGGN KIEKFMSNGL YKDTNGLSGI IGNNKKKLNT YSSFKGLKEL DPNPKEKALK SNLSRLMPLP TVSFNDKTLN SPTSQNRKSA 201: VYQVSFKRRS CDGEEVTEHR SSKRLLYRPK AGYTIPCYVK EKHQSSGSWC EIPPSNLKLR GETYFKDKRK HPAPNQCPYT PIGVDLFVCP RKIDHIAQHI 301: ELPNIKAVAN LPALLIVNIQ LPTYPAAMFL GDSNGEGMSI VLYFKLRENF KNEISQQYQD SIKKLVEDEM EKVKGFAKDN IVPFRERLKI VAGLVNPDEL 401: SLSSTEKKLI QAYNEKPVLS RPQHNFFKGP NYFEIDLDVH RFSYLSRKGL EAFRDRLKNG TLDLGLTIQA QKQEELPEKV LCCLRLSKID FVDNGQIPTL 501: LIPEEGESFP L |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)