AT5G39390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.684 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EF-TU receptor (TAIR:AT5G20480.1); Has 105441 Blast hits to 101727 proteins in 4175 species: Archae - 121; Bacteria - 11886; Metazoa - 36736; Fungi - 8087; Plants - 34277; Viruses - 298; Other Eukaryotes - 14036 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15763715..15765469 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55414.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKISLFFAFN ALMLLQVCIL VFAQARFSNE TDMQALLEFK SQVTENKREV LASWNHSFPL CHWIGITCGR KQERVTSLDL GGFKLSGSIS PSIGNLSFLR 101: SLNLGDNSFQ SNIPQEFEGS VPTKGVFQNG TTVSVFGNEN LCGGVIEMQL KPCIESPRQK KPFSLGEKVA VGVGVALLFL FIIVASLSWF KKKNDKISYE 201: ELYNATSGFS SSNLIGSGNF SDVFKGLLGL EEKLVAVKVL NLLKHGATKS FIAECESFKG IRHRNLAKLI TVCSSLDSQG NDFRALVYEF MPKGSLDMWL 301: QPEDLESANN HSRSLTFAEK VNIAIDVASA LEYLHVYCHD PVAHCDIKPS NVLLDDDLTA HVSDFGLARL LYNFDEKTFL NQFSSAGVRG TIGYAAPEYG 401: MGSKPSIQGD VYSFGVLLLE MFTGKKPTDN SFGGGYNLHG YTKSVLSCST SRGGRTMVDE WLRLVLEVGI KCSEEYPRDR MGMAEAVREL VSIKSKFFTS 501: SR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)