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AT5G39200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.997
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G39140.1); Has 65 Blast hits to 65 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJY3eggNOG:ENOG41118UGEMBL:AB010694EMBL:CP002688
EnsemblPlants:AT5G39200EnsemblPlants:AT5G39200.1entrez:833907entrez:833915
GeneID:833915Gramene:AT5G39200.1hmmpanther:PTHR33673HOGENOM:HOG000152540
KEGG:ath:AT5G39200OMA:YEPDRIPPhylomeDB:Q9FL88Proteomes:UP000006548
RefSeq:NP_198736.1STRING:3702.AT5G39200.1TAIR:AT5G39140TAIR:AT5G39200
UniGene:At.55245UniProt:Q9FL88
Coordinates (TAIR10) chr5:-:15694307..15695042
Molecular Weight (calculated) 22094.50 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.85
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MDQETKPGYE PDRIPHSVFA TSVTPKQEWS IQSNESLFSI HMGDHSFSKM YKSGELTNFE YTASPYISYY NNNIDNKIAP TDAGTKEVNI TMVETGPKTG
101: NRDGLTNVPK PDPRQQIPIS PTKSCHSETS NNSTTSFAFP TLGEYQQERK TSLNTKSESG KRELSRLDSK TGLYPDDSKQ GGAGAGAGGW LSCCLCFSVK
201: N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)