AT5G39100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : germin-like protein 6 | ||||||||
| Curator Summary (TAIR10) |
germin-like protein (GLP6) | ||||||||
| Computational Description (TAIR10) |
germin-like protein 6 (GLP6); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G39150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:15653204..15653596 | ||||||||
| Molecular Weight (calculated) | 14129.00 Da | ||||||||
| IEP (calculated) | 4.96 | ||||||||
| GRAVY (calculated) | 0.23 | ||||||||
| Length | 130 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MGISLVRIDY APYGQNPPHT HPRATEILVL IEGTLYVGFV SSNQDNNRLF AKVLYPGDVF VFPIGMIHFQ VNIGKTPAVA FAGLSSQNAG VITIADTVFG 101: STPPINPDIL AQAFQLDVNI VEDLEAKFRN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)